spreg.ML_ErrorPooled

class spreg.ML_ErrorPooled(y, x, w, method='LU', epsilon=1e-07, slx_lags=0, slx_vars='all', time_effects=False, nonspat_diag=True, vm=False, name_y=None, name_x=None, name_w=None, name_ds=None, latex=False)

Pooled Spatial Error Model (SEM) for Panel Data via ML.

Parameters:

yarray

(NT x 1) array for dependent variable

xarray

Two dimensional array with NT rows and one column for each independent (exogenous) variable, including the constant

wPySAL W object

Spatial weights matrix (N x N)

methodstr

if ‘LU’, LU decomposition for sparse matrices (Recommended for Panel) if ‘ord’, Ord eigenvalue calculation (Slow for large Panel) if ‘full’, brute force (Do not use for Panel)

epsilonfloat

tolerance criterion in minimize_scalar function and inverse_product

slx_lagsinteger

Number of spatial lags of X to include in the model specification. Default is 0.

slx_varsstr

List of variables to apply spatial lag to. Default is “all”.

time_effectsbool

If True, then include time dummies in the model specification (first omitted). Default: False

nonspat_diagbool

If True (default), then compute the ‘LMC_RE’ BSK test.

vmbool

If True, include variance-covariance matrix in summary results.

name_ystr

Name of dependent variable for output.

name_xlist of strings

Names of independent variables for output.

name_wstr

Name of weights matrix for output.

name_dsstr

Name of dataset for output.

latexbool

If True, output summary tables in LaTeX format.

Attributes:

outputdataframe

regression results pandas dataframe

summarystr

Summary of regression results and diagnostics (note: use in conjunction with the print command)

betasarray

kx1 array of estimated coefficients

uarray

(nxt)x1 array of residuals

predyarray

(nxt)x1 array of predicted y values

ninteger

Total number of observations (N * T)

tinteger

Number of time periods

kinteger

Number of variables

mean_yfloat

Mean of dependent variable

std_yfloat

Standard deviation of dependent variable

vmarray

Variance covariance matrix (kxk)

sig2float

Sigma squared used in computations

logllfloat

Log-likelihood of the estimation

aicfloat

Akaike information criterion

schwarzfloat

Schwarz criterion

Examples

>>> import libpysal
>>> import geopandas as gpd
>>> from spreg import ML_ErrorPooled

In this example, we will use data on NCOVR US County Homicides (3085 areas) included in libpysal.

>>> libpysal.examples.load_example('NCOVR')
>>> db = gpd.read_file(libpysal.examples.get_path("NAT.shp"))
>>> name_ds = "NCOVR.shp"

Extract the HR (homicide rates) data in the 70’s, 80’s and 90’s from the dataframe and make it the dependent variable for the regression. Note that the data can also be passed in the long format instead of wide format (i.e. a vector with n*t rows and a single column for the dependent variable and a matrix of dimension n*txk for the independent variables).

>>> y_name = ['HR70','HR80','HR90']
>>> y = db[y_name]

Extract RD and PS in the same time periods from the dataframe to be used as independent variables in the regression. IMPORTANT: The data must be organized in a way that all time periods of a given variable are side-by-side and in the correct time order. That is: x[:, 0:T] refers to T periods of k1, x[:, T+1:2T] refers to k2, etc. By default a vector of ones will be added to the independent variables passed in.

>>> x_names = ['RD70','RD80','RD90','PS70','PS80','PS90']
>>> x = db[x_names]

Since we are running a spatial model, we need to specify the spatial weights matrix that includes the spatial configuration of the observations. To do that, we can open an already existing gal file or create a new one. In this case, we will create one from NAT.shp.

>>> w = libpysal.weights.Queen.from_dataframe(db, use_index=True)
>>> w.transform = 'r'
>>> name_w = "NCOVR.gal"

We are all set with the preliminaries, we are good to run the model.

>>> reg = ML_ErrorPooled(y, x, w)

Once we have run the model, we can explore a little bit the output with the command print(reg.summary).

__init__(y, x, w, method='LU', epsilon=1e-07, slx_lags=0, slx_vars='all', time_effects=False, nonspat_diag=True, vm=False, name_y=None, name_x=None, name_w=None, name_ds=None, latex=False)

Methods

__init__(y, x, w[, method, epsilon, ...])
get_x_lag(w, regimes_att)

Attributes

mean_y
sig2n
sig2n_k
std_y
utu
vm

get_x_lag(w, regimes_att)

property mean_y

property sig2n

property sig2n_k

property std_y

property utu

property vm